SODAR

F.A.I.R. data management for omics (genomics, metabolomics, proteomics) studies. Web interface for biomedical scientist and command line interface and API for bioinformaticians.

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Features
  • Scalable data storage for
    • NGS raw data & metadata
    • Processing Results
    • Extendable metadata model, based on the ISA Tools Standard
  • IGV and UCSC Integration
  • Data Privacy
    • Charité & MDC user authentification
    • Project based authorization with different access levels
    • Full audit trails
  • Web-based graphical user interface for biomedical scientists
  • REST API for data/systems integration
  • Command line interfaces for bioinformaticians
  • Data storage built on iRODS
  • Metadata editor
  • In use for 300+ projects with 350TB+ of stored data
Technology

Talk on the technolgy and use cases at the iRODS User Group Meeting in Holland 2019, https://irods.org/ugm2019/, 30 minutes on youtube

SODAR Overview

SODAR Overview

Licence and Availabilty
  • Availabilty
  • Contact: Mikko Nieminen

M. Nieminen, O. Stolpe, F. Schumann, M. Holtgrewe, D. Beule
*SODAR Core: a Django-based framework for scientific data management and analysis web apps, DOI

Last modified: Jan 1, 0001