seaPiper

Standard processing of bulk RNA-Seq or pseudo-bulk scRNA-Seq data combined with gene set enrichment analysis produces a large amount of results. Static representations of such data are hard to navigate and do not provide the possibility to inspect and retrace the results. seaPiper is an interactive interface to present results of differential gene expression analysis, gene set enrichments and more.

seaPiper is based on bioshmods, a collection of R Shiny modules for bioinformatics.

Availability

• seaPiper Github repository
• seaPiper app as docker image
• bioshmods Github repository

CUBI Contact

• January Weiner

Last modified: Jan 4, 2023